PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YB
Protein Properties Length: 188aa    MW: 20948.9 Da    PI: 6.7478
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044750.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.51.1e-5436131297
                 NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                           +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wala lGf+dy++plk yl+k+
  HL.SW.v1.0.G044750.1  36 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALAALGFDDYADPLKRYLHKF 124
                           89*************************************************************************************** PP

                 NF-YB  91 relegek 97 
                           relege+
  HL.SW.v1.0.G044750.1 125 RELEGER 131
                           *****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.9E-5431169IPR009072Histone-fold
SuperFamilySSF471131.14E-4138165IPR009072Histone-fold
PfamPF008088.5E-2841105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.9E-196987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.9E-1988106No hitNo description
PRINTSPR006155.9E-19107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVDNLGNNRE REGFHYNNCS SGPSSSHEID QDGFIKEQDR LLPIANVGRI MKQILPPNAK  60
ISKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD ICWALAALGF DDYADPLKRY  120
LHKFRELEGE RSSAHGGQTS NSNNKGSGSN ISNNHNLDQN HHHHHHHHSQ NNDIINSNYI  180
GGCGDRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4535126192Transcription factor HapC (Eurofung)
4g92_B8e-4535126192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144547.18e-77hypothetical protein PHAVU_007G165100g
SwissprotO822488e-62NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLV7BJ219e-77V7BJ21_PHAVU; Uncharacterized protein
STRINGGLYMA10G02480.13e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-62nuclear factor Y, subunit B5